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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11086718_11087405_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11086718 - 11087405
Intron Length:
688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTACTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TTGTACTTACTT
Flanking Amino Acid:
HVFVYGQQWLVGSLEQAMLD
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
81.5
31.6
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
81.7
0.71
0.9
76.7
37.2
Minor 5ss
45.5
-0.5
2.5
56.3
43.3
Minor BPS
62.5
0.47
1.8
80.62
41.6

Associated Gene:

Gene:
TRPM7
Ensembl Gene ID:
ENSAPLG00000015254
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015958
11057110 - 11170816
113707