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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11087541_11087757_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11087541 - 11087757
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TCTTTTTATAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTTTTTATAA
Flanking Amino Acid:
IPRLEELYNTKQGPTNPTLF
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
71.7
33.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.3
0.59
1
78.7
32.7
Minor 5ss
34.2
-1.8
3.2
45.6
43.6
Minor BPS
55.7
0.17
1.7
67.48
39.5

Associated Gene:

Gene:
TRPM7
Ensembl Gene ID:
ENSAPLG00000015254
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015958
11057110 - 11170816
113707