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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11088524_11089048_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11088524 - 11089048
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGTAGC
5'SS Class:
major
3'SS Sequence:
TTATTCTTGTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
TTTCTATTATTC
Flanking Amino Acid:
IYNSLSGNSRRSGRNTSNTT
Intron Amino Acid Position:
546

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
68.8
42.3
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
80.5
0.69
1
81.2
36.2
Minor 5ss
41.7
-0.9
2.5
45.6
42.8
Minor BPS
51.8
0.04
1.8
68.58
36.9

Associated Gene:

Gene:
TRPM7
Ensembl Gene ID:
ENSAPLG00000015254
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015958
11057110 - 11170816
113707