About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1108901_1110743_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1108901 - 1110743
Intron Length:
1843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
ATTTCCTCAATT
Flanking Amino Acid:
CFHASYAKSPGWRPAFRYYN
Intron Amino Acid Position:
613

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
77.8
38.7
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
76.1
0.59
0.9
73.4
34.9
Minor 5ss
30.5
-2.2
2.9
41.4
45
Minor BPS
78
0.96
1.4
91
32.2

Associated Gene:

Gene:
SLC12A1
Ensembl Gene ID:
ENSAPLG00000007672
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008056
1085515 - 1134105
48591