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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11089184_11089799_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11089184 - 11089799
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGATG
5'SS Class:
major
3'SS Sequence:
TTTATTTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTTTTAAAG
Flanking Amino Acid:
IKTAQPYKPKIDTGAEEGKK
Intron Amino Acid Position:
591

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
66.9
44.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.8
0.69
1
82.3
33.1
Minor 5ss
34.2
-1.8
3.5
47.9
47.8
Minor BPS
66.8
0.39
1.4
68.96
38.4

Associated Gene:

Gene:
TRPM7
Ensembl Gene ID:
ENSAPLG00000015254
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015958
11057110 - 11170816
113707