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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11090081_11090566_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11090081 - 11090566
Intron Length:
486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAATTAT
5'SS Class:
major
3'SS Sequence:
TCCTTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTGTTTTGATA
Flanking Amino Acid:
DTSEELKQYSNEFGQLAVEL
Intron Amino Acid Position:
684

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
80.1
28.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
86.1
0.81
0.7
80.2
31.9
Minor 5ss
42.9
-0.8
3
57.8
41.2
Minor BPS
63.6
0.42
1.3
72.69
33.6

Associated Gene:

Gene:
TRPM7
Ensembl Gene ID:
ENSAPLG00000015254
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015958
11057110 - 11170816
113707