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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11092398_11093073_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11092398 - 11093073
Intron Length:
676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
ATACATATAAAA
Flanking Amino Acid:
APIVKFWFNTLAYLGFLMLY
Intron Amino Acid Position:
861

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
84.3
29.3
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
82.4
0.73
0.8
81.3
30.7
Minor 5ss
41.2
-1
3
59
45.5
Minor BPS
45.1
-0.3
1.8
56.03
35.6

Associated Gene:

Gene:
TRPM7
Ensembl Gene ID:
ENSAPLG00000015254
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015958
11057110 - 11170816
113707