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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11095724_11096245_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11095724 - 11096245
Intron Length:
522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCAATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CCCCCCCCAATA
Flanking Amino Acid:
FGEVYAYEIDVCANNSESQV
Intron Amino Acid Position:
1057

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
67.8
37.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
64.8
0.33
0.9
57.4
30.8
Minor 5ss
32.4
-2
3.1
39.7
40.1
Minor BPS
44.4
-0.4
1.8
49.38
41.9

Associated Gene:

Gene:
TRPM7
Ensembl Gene ID:
ENSAPLG00000015254
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015958
11057110 - 11170816
113707