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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11096379_11097146_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11096379 - 11097146
Intron Length:
768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
ACGTGTTTAATT
Flanking Amino Acid:
IMVNLLIAFFNNVYLQVKAI
Intron Amino Acid Position:
1101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
90.2
0.9
0.6
88.3
21.4
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
57.3
0.31
1.8
69.26
42.8

Associated Gene:

Gene:
TRPM7
Ensembl Gene ID:
ENSAPLG00000015254
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015958
11057110 - 11170816
113707