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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11101275_11102133_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11101275 - 11102133
Intron Length:
859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACGTGT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTTTTTTTAATA
Flanking Amino Acid:
KIKERSADIEEQQEDFKKAI
Intron Amino Acid Position:
1472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.2
70.4
42.5
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
86.6
0.82
0.7
85.3
27.9
Minor 5ss
44
-0.7
3.3
65
46.2
Minor BPS
82.2
1.01
0.9
86.33
25.3

Associated Gene:

Gene:
TRPM7
Ensembl Gene ID:
ENSAPLG00000015254
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015958
11057110 - 11170816
113707