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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11104612_11105298_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11104612 - 11105298
Intron Length:
687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TGACATTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GAAACAATAACA
Flanking Amino Acid:
LQGRPSNSNQMPSEEDALNG
Intron Amino Acid Position:
1555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
80
34.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
71.2
0.48
1
64.5
41
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
47.4
-0.2
1.9
58.29
39.7

Associated Gene:

Gene:
TRPM7
Ensembl Gene ID:
ENSAPLG00000015254
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015958
11057110 - 11170816
113707