Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11105325_11105633_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11105325 - 11105633

Intron Length:

309

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TGATCTCTCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCATTAT

U12 Branch Point Sequence:

TATGTCTGATCT

Flanking Amino Acid:

QMPSEEDALNGIASPFKPIM

Intron Amino Acid Position:

1564

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.3

0.97

0.8

89.6

24.1

Major BPS

72.1

0.55

1.1

62.3

43.7

Major PPT

76.2

0.59

0.9

73.5

36.7

Minor 5ss

46.3

-0.4

2.8

64.1

41.5

Minor BPS

52.4

0.15

1.8

73.59

43.1

Associated Gene:

Gene:

TRPM7

Ensembl Gene ID:

ENSAPLG00000015254

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015958

11057110 - 11170816

113707