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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11107169_11107489_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11107169 - 11107489
Intron Length:
321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATTAAGA
Flanking Amino Acid:
MKPKSIPYSPRFLEVFLLYC
Intron Amino Acid Position:
1725

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
75.2
0.57
0.9
70.3
40.1
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
65.7
0.49
1.9
78.05
38.2

Associated Gene:

Gene:
TRPM7
Ensembl Gene ID:
ENSAPLG00000015254
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015958
11057110 - 11170816
113707