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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11108386_11170782_F

Intron Information:

Intron Rank:
38
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11108386 - 11170782
Intron Length:
62397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
CTGGAAATATAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGGAAAT
U12 Branch Point Sequence:
AATTCTGGAAAT
Flanking Amino Acid:
DPSVIKAGEKRSYPSAYTYH
Intron Amino Acid Position:
1811

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.4
31.8
Major BPS
52
0.05
1.3
59
44.6
Major PPT
48.3
-0.1
1.2
47.6
42.9
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
47.6
-0.1
2.1
69.92
40.6

Associated Gene:

Gene:
TRPM7
Ensembl Gene ID:
ENSAPLG00000015254
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015958
11057110 - 11170816
113707