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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1110900_1112585_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1110900 - 1112585
Intron Length:
1686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
TTATTATATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATCTTTATTA
Flanking Amino Acid:
LYIYVTYKKPEVNWGSSTQA
Intron Amino Acid Position:
665

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
72.3
39
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.3
0.66
1
74.7
39.1
Minor 5ss
31
-2.2
3.2
39.6
45.9
Minor BPS
67.8
0.56
1.5
75.84
35.8

Associated Gene:

Gene:
SLC12A1
Ensembl Gene ID:
ENSAPLG00000007672
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008056
1085515 - 1134105
48591