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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11119775_11120420_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11119775 - 11120420
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTGCTTTAAG
Flanking Amino Acid:
LASTSKCTLQECLRLFSKEE
Intron Amino Acid Position:
997

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
70.4
42.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73
0.52
1.1
75.9
38.4
Minor 5ss
36.1
-1.6
3.3
46.8
48.5
Minor BPS
52.2
-0
2.3
68.76
44.3

Associated Gene:

Gene:
USP8
Ensembl Gene ID:
ENSAPLG00000001449
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024603
11118158 - 11135817
17660
ENSAPLT00000001904
11118158 - 11135817
17660