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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11120658_11122015_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11120658 - 11122015
Intron Length:
1358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
GGTATTCAAACT
Flanking Amino Acid:
MDGLHEDLNKADNRKRYKEE
Intron Amino Acid Position:
918

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
80.7
33.7
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
81.2
0.7
0.9
76.3
36.9
Minor 5ss
42.8
-0.8
2.9
58
40.7
Minor BPS
44.8
-0.3
1.9
62.44
41.5

Associated Gene:

Gene:
USP8
Ensembl Gene ID:
ENSAPLG00000001449
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024603
11118158 - 11135817
17660
ENSAPLT00000001904
11118158 - 11135817
17660