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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11124318_11124942_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11124318 - 11124942
Intron Length:
625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAATACA
5'SS Class:
major
3'SS Sequence:
CTGTATTTATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATACAT
U12 Branch Point Sequence:
CATACCTCACAT
Flanking Amino Acid:
DSDQDTERLKSQREPLMRAR
Intron Amino Acid Position:
662

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
76.8
31.6
Major BPS
62.6
0.31
1.1
70.6
34.3
Major PPT
70.8
0.47
1
70.6
39.6
Minor 5ss
37.1
-1.5
2.8
43.5
37.7
Minor BPS
46.5
-0.1
2
63.74
45.7

Associated Gene:

Gene:
USP8
Ensembl Gene ID:
ENSAPLG00000001449
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001904
11118158 - 11135817
17660