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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1112884_1116756_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1112884 - 1116756
Intron Length:
3873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
TTGTATCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GCCTTCTTAATA
Flanking Amino Acid:
GLCICCEVYTGPRKLCVKEM
Intron Amino Acid Position:
736

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
69.7
37.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76
0.59
1
70.6
39.9
Minor 5ss
37.5
-1.4
3.2
48.7
47
Minor BPS
68.5
0.58
1.2
67
40.2

Associated Gene:

Gene:
SLC12A1
Ensembl Gene ID:
ENSAPLG00000007672
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008056
1085515 - 1134105
48591