Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11134129_11134730_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11134129 - 11134730

Intron Length:

602

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATAAAAA

5'SS Class:

major

3'SS Sequence:

CTTGTAATTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

GTACCATTAATA

Flanking Amino Acid:

KKRPDFKQQQDYFHSILGPT

Intron Amino Acid Position:

114

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.4

0.6

32.5

Major BPS

84.4

0.85

1.1

34.5

Major PPT

74.2

0.55

0.9

71.2

38.6

Minor 5ss

38.2

-1.3

2.9

48.3

47.4

Minor BPS

60.8

0.33

1.6

68.34

37.3

Associated Gene:

Gene:

USP8

Ensembl Gene ID:

ENSAPLG00000001449

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024603

11118158 - 11135817

17660

ENSAPLT00000001904

11118158 - 11135817

17660