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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11155919_11156391_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11155919 - 11156391
Intron Length:
473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACACAA
U12 Branch Point Sequence:
GCTTACACAATG
Flanking Amino Acid:
HASIVEVLLKHGADVNAKDM
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.5
31.7
Major BPS
60.7
0.27
1
67.2
29.6
Major PPT
84.4
0.77
0.8
80.5
31.5
Minor 5ss
35.5
-1.7
3.1
50.2
45.8
Minor BPS
44.5
-0.5
2
50.59
43.3

Associated Gene:

Gene:
GABPB1
Ensembl Gene ID:
ENSAPLG00000002560
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002630
11154788 - 11167140
12353