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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11156587_11156934_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11156587 - 11156934
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
ATACTACTACCT
Flanking Amino Acid:
GNEDLAEILQIAMQNQINTN
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1.1
87.9
29.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
76.8
0.6
0.8
69.5
36.8
Minor 5ss
55.9
0.2
2.5
76
39.7
Minor BPS
42.8
-0.4
2
62.68
40.7

Associated Gene:

Gene:
GABPB1
Ensembl Gene ID:
ENSAPLG00000002560
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002630
11154788 - 11167140
12353