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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11171611_11173055_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11171611 - 11173055
Intron Length:
1445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAA
U12 Branch Point Sequence:
CTAAACTCAAAG
Flanking Amino Acid:
MEPEEYRRRGKEMVDYICQ
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
81.3
32.8
Major BPS
69.1
0.48
0.9
69.6
26.6
Major PPT
84.9
0.79
0.8
77.2
37.1
Minor 5ss
29
-2.4
3.2
40.6
45.6
Minor BPS
44.5
-0.5
1.9
48.14
44.2

Associated Gene:

Gene:
HDC
Ensembl Gene ID:
ENSAPLG00000002933
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002984
11171583 - 11181664
10082