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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11173229_11173789_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11173229 - 11173789
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
AATTTTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TCAGACTTAACT
Flanking Amino Acid:
GDIEKIIMPGVVHWQSPHMH
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.7
33.7
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
74.8
0.56
0.9
66.6
44.2
Minor 5ss
34.7
-1.7
3
41.3
44.8
Minor BPS
65.4
0.56
1.7
77.77
44.2

Associated Gene:

Gene:
HDC
Ensembl Gene ID:
ENSAPLG00000002933
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002984
11171583 - 11181664
10082