About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11175426_11176294_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11175426 - 11176294
Intron Length:
869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
AATGTCTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
GTTGCAGTAAAT
Flanking Amino Acid:
PDSVGGGVLQSTVSESTLVA
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
78.2
0.64
0.9
74.1
40.6
Minor 5ss
30.1
-2.3
3.2
37.6
47.1
Minor BPS
46.3
-0.2
2.4
71.29
45

Associated Gene:

Gene:
HDC
Ensembl Gene ID:
ENSAPLG00000002933
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002984
11171583 - 11181664
10082