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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11177133_11177382_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11177133 - 11177382
Intron Length:
250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTACGTTCA
5'SS Class:
major
3'SS Sequence:
TGTTCTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTCATCTGAACA
Flanking Amino Acid:
DRKKGLVPIFVCATLGTTGV
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.1
63.5
37.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.6
0.71
0.8
74
36.7
Minor 5ss
42
-0.9
3
55.8
42.8
Minor BPS
58.3
0.26
1.5
65.57
40.5

Associated Gene:

Gene:
HDC
Ensembl Gene ID:
ENSAPLG00000002933
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002984
11171583 - 11181664
10082