About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11177450_11178294_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11177450 - 11178294
Intron Length:
845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
TGATTTCTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
GATGCCTTACCT
Flanking Amino Acid:
FDNLSELGPICDAEGLWLHI
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
74.4
34.2
Major BPS
75.8
0.64
1
65.8
41
Major PPT
75.7
0.58
1
74.9
39.6
Minor 5ss
39.8
-1.1
3.4
58.5
40.5
Minor BPS
63.7
0.51
1.8
77.93
44.1

Associated Gene:

Gene:
HDC
Ensembl Gene ID:
ENSAPLG00000002933
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002984
11171583 - 11181664
10082