About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11178647_11179815_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11178647 - 11179815
Intron Length:
1169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTGCCCTTATTG
Flanking Amino Acid:
PNSGAAVDFMHWQIPLSRRF
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
34.9
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
81.2
0.7
0.9
75.8
38.1
Minor 5ss
42.1
-0.9
2.9
55.5
43.9
Minor BPS
60.3
0.19
1.7
64.68
43.5

Associated Gene:

Gene:
HDC
Ensembl Gene ID:
ENSAPLG00000002933
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002984
11171583 - 11181664
10082