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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11179915_11180594_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11179915 - 11180594
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATGTACA
5'SS Class:
major
3'SS Sequence:
TTCTTAATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTTTCTTAATT
Flanking Amino Acid:
VKKLQAHIRHGTETAKFFES
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
75.4
33.8
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
83.5
0.75
0.8
77.5
34.5
Minor 5ss
44.5
-0.6
2.5
56.5
41
Minor BPS
90.1
1.34
0.7
99.4
21.6

Associated Gene:

Gene:
HDC
Ensembl Gene ID:
ENSAPLG00000002933
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002984
11171583 - 11181664
10082