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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11197558_11204052_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
11197558 - 11204052
Intron Length:
6495

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCTCTTCTT
5'SS Class:
weak_major
3'SS Sequence:
TTTTTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTTTCATAGATT
Flanking Amino Acid:
SAQRMVFTHESMYAAMPRDI
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.7
0.02
1.4
59.6
44.8
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
90.4
0.91
0.6
89.7
18.7
Minor 5ss
26.9
-2.7
4
42.8
38.1
Minor BPS
53.8
0.2
2
76.98
39.7

Associated Gene:

Gene:
GATM
Ensembl Gene ID:
ENSAPLG00000003331
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003424
11196746 - 11208627
11882