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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11204244_11205003_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11204244 - 11205003
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTATTC
5'SS Class:
major
3'SS Sequence:
CTTTCTGAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CCTTTCTGAATT
Flanking Amino Acid:
PTMADELYDKDYPIRSVEDR
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
70.5
34.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
66.8
0.38
1
67.3
38.2
Minor 5ss
48.7
-0.1
2.7
68.2
42.9
Minor BPS
65.1
0.55
1.4
75.82
41.6

Associated Gene:

Gene:
GATM
Ensembl Gene ID:
ENSAPLG00000003331
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003424
11196746 - 11208627
11882