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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11205142_11205391_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11205142 - 11205391
Intron Length:
250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TCATTTATACTC
Flanking Amino Acid:
GRDIFVQRSQVTNYMGIEWM
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
76.5
34.2
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
85.9
0.81
0.7
84.8
30
Minor 5ss
38
-1.3
3
48.1
47.6
Minor BPS
45.9
-0.3
1.8
54.77
38.1

Associated Gene:

Gene:
GATM
Ensembl Gene ID:
ENSAPLG00000003331
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003424
11196746 - 11208627
11882