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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11205580_11206490_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11205580 - 11206490
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATCAAGT
5'SS Class:
weak_major
3'SS Sequence:
ACAGTTACTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTACAGTTACT
Flanking Amino Acid:
CYQVRLQQNRNWFILVCLDH
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.4
0.25
1.2
61.8
42.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
62.9
0.29
1
56.1
39.2
Minor 5ss
48.5
-0.1
2.7
66.4
38.9
Minor BPS
47.2
-0.1
2.5
78.43
43.2

Associated Gene:

Gene:
GATM
Ensembl Gene ID:
ENSAPLG00000003331
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003424
11196746 - 11208627
11882