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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11206631_11208514_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11206631 - 11208514
Intron Length:
1884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTTCT
5'SS Class:
major
3'SS Sequence:
ATGTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATTTAAAA
Flanking Amino Acid:
TSIQKMFEKLGISTIKVSIR
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74.1
37.2
Major BPS
100
1.24
0.5
100
0
Major PPT
83.3
0.75
0.8
77.8
36
Minor 5ss
48.5
-0.1
2.4
59.5
45
Minor BPS
63.2
0.41
1.6
75.42
35.1

Associated Gene:

Gene:
GATM
Ensembl Gene ID:
ENSAPLG00000003331
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003424
11196746 - 11208627
11882