About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11254301_11343706_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11254301 - 11343706
Intron Length:
89406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTACG
5'SS Class:
major
3'SS Sequence:
TTATTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTCCCTTTTATT
Flanking Amino Acid:
DDFLHFPPDLAPVTDVQFGP
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
70.8
39.2
Major BPS
84.4
0.85
1
84
34.5
Major PPT
87.2
0.84
0.7
81.4
36.1
Minor 5ss
37.9
-1.4
2.7
45.6
37
Minor BPS
61
0.43
1.6
77.02
39.8

Associated Gene:

Gene:
PDE8A
Ensembl Gene ID:
ENSAPLG00000003946
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004109
11253992 - 11380997
127006