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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1132935_1133969_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1132935 - 1133969
Intron Length:
1035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTTGC
5'SS Class:
major
3'SS Sequence:
TCTATCTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTATTTTTACTT
Flanking Amino Acid:
EHSRAANLIVLSLPVARKGV
Intron Amino Acid Position:
1072

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
62.6
38.8
Major BPS
80
0.75
1
78.6
31
Major PPT
69.5
0.44
1
65.6
39.8
Minor 5ss
38
-1.4
3
53.5
43.7
Minor BPS
64.3
0.53
1.5
79.64
37.1

Associated Gene:

Gene:
SLC12A1
Ensembl Gene ID:
ENSAPLG00000007672
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008056
1085515 - 1134105
48591