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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11349582_11351069_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11349582 - 11351069
Intron Length:
1488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTATG
5'SS Class:
major
3'SS Sequence:
ATTTTATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATATTTCTAACA
Flanking Amino Acid:
LPLISAGFTRRYVENSNIMA
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
74.4
41.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.3
0.84
0.8
82
34
Minor 5ss
45
-0.5
2.5
51.3
45.4
Minor BPS
60.4
0.32
1.6
70.95
34.7

Associated Gene:

Gene:
PDE8A
Ensembl Gene ID:
ENSAPLG00000003946
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004109
11253992 - 11380997
127006