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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11351159_11351387_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11351159 - 11351387
Intron Length:
229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
TTAAAGCTAATC
Flanking Amino Acid:
FGEVRAQFKLRACNSLFTAL
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
86
25
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
84.7
0.78
0.8
77.9
36.6
Minor 5ss
43.8
-0.7
2.8
58.6
45.8
Minor BPS
42.3
-0.6
2.3
57.96
40.5

Associated Gene:

Gene:
PDE8A
Ensembl Gene ID:
ENSAPLG00000003946
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004109
11253992 - 11380997
127006