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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11353173_11358624_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11353173 - 11358624
Intron Length:
5452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTCCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
TTTGCTTGAATT
Flanking Amino Acid:
TINSCIKIGKEWQGMYYAKK
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.5
1.05
0.7
92.2
16.5
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
87.2
0.84
0.7
84.9
29.1
Minor 5ss
32
-2.1
2.8
41.5
45.1
Minor BPS
68.3
0.65
1.5
84.4
36.8

Associated Gene:

Gene:
PDE8A
Ensembl Gene ID:
ENSAPLG00000003946
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004109
11253992 - 11380997
127006