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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11359996_11360095_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11359996 - 11360095
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TACTGATTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTGACTAACT
Flanking Amino Acid:
ISRLCNDNNKAEKTCERVQA
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
72.4
0.51
0.9
66.3
39.5
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
49.3
0.03
2.3
77.86
44.1

Associated Gene:

Gene:
PDE8A
Ensembl Gene ID:
ENSAPLG00000003946
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004109
11253992 - 11380997
127006