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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11360139_11361161_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11360139 - 11361161
Intron Length:
1023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
ATTTTCTCAACA
Flanking Amino Acid:
CERVQAESQTDIQTSRHKDR
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
67.7
37.5
Major BPS
79
0.72
1
78.4
31.2
Major PPT
78.9
0.65
0.9
74.7
34.3
Minor 5ss
38.3
-1.3
3
50.3
46.3
Minor BPS
73.7
0.74
1.4
81.94
32.6

Associated Gene:

Gene:
PDE8A
Ensembl Gene ID:
ENSAPLG00000003946
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004109
11253992 - 11380997
127006