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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11361240_11362463_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11361240 - 11362463
Intron Length:
1224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTTAA
5'SS Class:
major
3'SS Sequence:
GTTTCCCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
AGGATACTAATT
Flanking Amino Acid:
VRSTTSRGSDGSSQRRHSSM
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
73.1
34
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
76.7
0.6
0.9
70.7
35.1
Minor 5ss
38.6
-1.3
3
45.8
44.7
Minor BPS
43.9
-0.3
1.8
57.66
38.8

Associated Gene:

Gene:
PDE8A
Ensembl Gene ID:
ENSAPLG00000003946
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004109
11253992 - 11380997
127006