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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11362535_11363178_F

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11362535 - 11363178
Intron Length:
644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTGC
5'SS Class:
major
3'SS Sequence:
GATGTTAAACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TACTTCTAAATT
Flanking Amino Acid:
SMTIEAPITKVINIINAAQE
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
66.7
39.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
53.7
0.08
1.1
46.1
44.7
Minor 5ss
37.1
-1.5
3.3
50.7
45.8
Minor BPS
62.9
0.48
1.7
76.1
41.2

Associated Gene:

Gene:
PDE8A
Ensembl Gene ID:
ENSAPLG00000003946
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004109
11253992 - 11380997
127006