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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11363344_11365624_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11363344 - 11365624
Intron Length:
2281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TTTCATTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAATTCTCAACT
Flanking Amino Acid:
TSDLVGGLMTDGLRRLSGNE
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
72.9
0.52
1
69.5
40.2
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
69.9
0.7
1.5
82.44
38.3

Associated Gene:

Gene:
PDE8A
Ensembl Gene ID:
ENSAPLG00000003946
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004109
11253992 - 11380997
127006