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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11366059_11368170_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11366059 - 11368170
Intron Length:
2112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTCTTCACA
Flanking Amino Acid:
IFELEAATHKRPLVYLGLKI
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.2
83.2
30.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
91.6
0.94
0.6
87.6
22.6
Minor 5ss
30.5
-2.2
2.5
33.7
41.5
Minor BPS
75.4
0.79
1.7
86.69
32.1

Associated Gene:

Gene:
PDE8A
Ensembl Gene ID:
ENSAPLG00000003946
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004109
11253992 - 11380997
127006