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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11368370_11371161_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11368370 - 11371161
Intron Length:
2792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
ATCTTTCTATTT
Flanking Amino Acid:
AYFLSKERVKQTLDPIDEVA
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
76.7
33.9
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
89
0.88
0.7
81.4
35.2
Minor 5ss
29.1
-2.4
2.7
33.3
41.7
Minor BPS
47.3
-0.1
1.8
65.82
39.8

Associated Gene:

Gene:
PDE8A
Ensembl Gene ID:
ENSAPLG00000003946
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004109
11253992 - 11380997
127006