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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11379131_11379902_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11379131 - 11379902
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTCCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
AATTCTGCAAAC
Flanking Amino Acid:
FITDMFDAWDAFADLPNLMQ
Intron Amino Acid Position:
744

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78
31.9
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
79.7
0.67
0.7
73.4
31.6
Minor 5ss
32.5
-2
3.2
40.8
45.4
Minor BPS
45.6
-0.3
2.2
59.61
39.2

Associated Gene:

Gene:
PDE8A
Ensembl Gene ID:
ENSAPLG00000003946
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004109
11253992 - 11380997
127006