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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11380026_11380107_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
11380026 - 11380107
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGTGTAAT
5'SS Class:
major
3'SS Sequence:
TTGGTCTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTGTTCATGT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
0.9
77.5
31.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
80.6
0.69
0.9
77.8
36.7
Minor 5ss
38.2
-1.3
2.7
47.2
42.9
Minor BPS
44.9
-0.3
2.3
71.47
45.8

Associated Gene:

Gene:
PDE8A
Ensembl Gene ID:
ENSAPLG00000003946
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004109
11253992 - 11380997
127006