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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11393922_11396167_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11393922 - 11396167
Intron Length:
2246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
CGGTATTTGACT
Flanking Amino Acid:
WCMRHIITPSRHKYEFLHSG
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
30
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
82.7
0.74
0.8
76.5
32.3
Minor 5ss
33.1
-1.9
3.4
48.3
47.4
Minor BPS
56.2
0.28
1.6
68.32
42.9

Associated Gene:

Gene:
FSD2
Ensembl Gene ID:
ENSAPLG00000004759
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004914
11393669 - 11412848
19180