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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11396345_11399919_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11396345 - 11399919
Intron Length:
3575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACACAAG
5'SS Class:
major
3'SS Sequence:
CTGTCTCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTGCAA
U12 Branch Point Sequence:
CTGTCTCTCACA
Flanking Amino Acid:
DLPVYDNSFTRCIGILGSLI
Intron Amino Acid Position:
548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
62.3
43.9
Major BPS
57
0.18
1.3
69.4
37.7
Major PPT
77.8
0.63
0.8
72
32.6
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
48.5
-0.1
2.1
63.23
43.6

Associated Gene:

Gene:
FSD2
Ensembl Gene ID:
ENSAPLG00000004759
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004914
11393669 - 11412848
19180